@article{rocks2003,
  author    = {Philip M. Papadopoulos and
               Mason J. Katz and
               Greg Bruno},
  title     = {{NPACI} Rocks: tools and techniques for easily deploying manageable
               Linux clusters},
  journal   = {Concurrency and Computation: Practice and Experience},
  volume    = {15},
  number    = {7-8},
  pages     = {707--725},
  year      = {2003},
}

@inproceedings{rolls2004,
  author    = {Greg Bruno and
               Mason J. Katz and
               Federico D. Sacerdoti and
               Philip M. Papadopoulos},
  title     = {Rolls: modifying a standard system installer to support user-customizable
               cluster frontend appliances},
  booktitle = {2004 {IEEE} International Conference on Cluster Computing {(CLUSTER}
               2004), September 20-23 2004, San Diego, California, {USA}},
  pages     = {421--430},
  year      = {2004},
}

@misc{rocks_url,
  howpublished={http://www.rocksclusters.org/},
  title={{Rocks}},
}

@misc{warewulf_url,
  howpublished={http://warewulf.lbl.gov/trac},
  title={{Warewulf Project}},
}

@misc{oscar_url,
  howpublished={http://svn.oscar.openclustergroup.org/},
  title={{OSCAR}},
}

@inproceedings{oscar2001,
  author    = {Stephen L. Scott},
  title     = {{OSCAR} and the Beowulf Arms Race for the "Cluster Standard"},
  booktitle = {2001 {IEEE} International Conference on Cluster Computing {(CLUSTER}
               2001), 8-11 October 2001, Newport Beach, CA, {USA}},
  pages     = {137},
  year      = {2001},
}

@misc{bull-scs_url,
  howpublished={http://prod.bull-world.com/sites/default/files/asset/document/f-bull\_scsuite-en7\_web.pdf},
  title={{BULL Supercomputer Suite}},
}




@misc{LinuxFoundation_url,
  howpublished={https://www.linuxfoundation.org},
  title={{Linux Foundation}},
}

@misc{OBS_url,
  howpublished={http://openbuildservice.org},
  title={{Open Build Service}},
}

@misc{TSC_url,
  howpublished={https://github.com/openhpc/ohpc/wiki/Governance-Overview},
  title={{OpenHPC Governance}},
}

@misc{Lustre_url,
  howpublished={http://lustre.org},
  title={{Lustre Parallel File System}},
}

@misc{bats_url,
  howpublished = {https://github.com/sstephenson/bats},
  title = {{Bash Automated Testing System (BATS)}},
}

@misc{easybuild_url,
  howpublished = {https://github.com/hpcugent/easybuild},
  title = {{EasyBuild software build and installation framework}},
}

@misc{epel_url,
  howpublished = {https://fedoraproject.org/wiki/EPEL},
  title = {{Extra Packages for Enterprise Linux (EPEL)}},
}

@misc{fftw_url,
  howpublished = {http://fftw.org},
  title =  {{FFTW: Discrete Fourier Transforms}},
}

@Article{FFTW05,
  author = 	 {Frigo, Matteo and Johnson, Steven~G.},
  title = 	 {The Design and Implementation of {FFTW3}},
  journal = 	 {Proceedings of the IEEE},
  year = 	 2005,
  volume =	 93,
  number =	 2,
  pages =	 {216--231},
  note =	 {Special issue on ``Program Generation, Optimization, and Platform Adaptation''}
}

@misc{hdf5_url,
  howpublished = {https://www.hdfgroup.org/HDF5/},
  title = {{Hierarchical Data Format (HDF5)}},
}

@misc{jenkins_url,
  howpublished = {https://jenkins.io/},
  title = {{Jenkins Automation Server for Continuous Integration}},
}

@misc{lmod_url,
  title = {https://github.com/TACC/Lmod},
  note = {{Lmod: An Environment Module System based on Lua}},
}

@misc{spack_url,
  howpublished = {http://software.llnl.gov/spack/},
  title =  {{Spack package management tool}},
}

@inproceedings{tacc_sc_best_practices:2011,
 author = {McLay, Robert and Schulz, Karl W. and Barth, William L. and Minyard, Tommy},
 title = {{Best Practices for the Deployment and Management of Production HPC clusters}},
 booktitle = {State of the Practice Reports},
 series = {SC '11},
 year = {2011},
 isbn = {978-1-4503-1139-7},
 location = {Seattle, Washington},
 pages = {9:1--9:11},
 articleno = {9},
 numpages = {11},
 url = {http://doi.acm.org/10.1145/2063348.2063360},
 doi = {10.1145/2063348.2063360},
 acmid = {2063360},
 publisher = {ACM},
 month = nov,
}

@INPROCEEDINGS{Jette02slurm:simple,
    author = {Morris A. Jette and Andy B. Yoo and Mark Grondona},
    title = {{SLURM: Simple Linux Utility for Resource Management}},
    booktitle = {Lecture Notes in Computer Science: Proceedings of Job Scheduling Strategies for Parallel Processing (JSSPP) 2003},
    year = {2002},
    pages = {44--60},
    publisher = {Springer-Verlag}
}			

@conference{furlani_1996,
  author =       {John L. Furlani and Peter W. Osel},
  title =        {Abstract Yourself With Modules},
  booktitle =    {Proceedings of the Tenth Large Installation Systems Administration Conference (LISA '96)},
  year =         1996,
  pages =        {193-204}
}

@misc{PETSc_url,
  howpublished={https://www.mcs.anl.gov/petsc/},
  title={{PETSc: Portable, Extensible Toolkit for  Scientific Computation}},
     }

@inproceedings{mvapich2,
  author    = {Wei Huang and
    Gopalakrishnan Santhanaraman and
    Hyun{-}Wook Jin and
    Qi Gao and
    Dhabaleswar K. Panda},
   title     = {Design of High Performance {MVAPICH2:} {MPI2} over InfiniBand},
    booktitle = {Sixth {IEEE} International Symposium on Cluster Computing and the
    Grid (CCGrid 2006), 16-19 May 2006, Singapore},
       pages     = {43--48},
       year      = {2006},
}


@misc{MVAPICH_url,
  howpublished={http://mvapich.cse.ohio-state.edu},
  title={{MVAPICH: MPI over InfiniBand, 10GigE/iWARP and RoCE}},
}

 
@article{Karypis:1998,
 author = {Karypis, George and Kumar, Vipin},
 title = {A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs},
 journal = {SIAM J. Sci. Comput.},
 issue_date = {Aug. 1998},
 volume = {20},
 number = {1},
 month = dec,
 year = {1998},
 issn = {1064-8275},
 pages = {359--392},
 numpages = {34},
 url = {http://dx.doi.org/10.1137/S1064827595287997},
 doi = {10.1137/S1064827595287997},
 acmid = {305248},
 publisher = {Society for Industrial and Applied Mathematics},
 address = {Philadelphia, PA, USA},
 keywords = {fill-reducing orderings, finite element computations, graph partitioning, parallel computations},
}

@inproceedings{rolls_sensors2012,
  author    = {Yoshio Tanaka and
               Naotaka Yamamoto and
               Ryousei Takano and
               Akihiko Ota and
               Philip M. Papadopoulos and
               Nadya Williams and
               Cindy Zheng and
               Weicheng Huang and
               Yi{-}Lun Pan and
               Chang{-}Hsing Wu and
               Hsi{-}En Yu and
               J. H. Steven Shiao and
               Kohei Ichikawa and
               Taiki Tada and
               Susumu Date and
               Shinji Shimojo},
  title     = {Building Secure and Transparent Inter-Cloud Infrastructure for Scientific
               Applications},
  booktitle = {Transition of {HPC} Towards Exascale Computing - Selected Papers from
               the High Performance Computing Workshop, Cetraro, Italy, June 25-29,
               2012.},
  pages     = {35--52},
  year      = {2012},
}

@InProceedings{gabriel04:openmpi,
	       author       = {Edgar Gabriel and Graham E. Fagg and George Bosilca
			       and Thara Angskun and Jack J. Dongarra and Jeffrey
			       M. Squyres and Vishal Sahay and Prabhanjan Kambadur
			       and Brian Barrett and Andrew Lumsdaine and Ralph
			       H. Castain and David J. Daniel and Richard L. Graham
			       and Timothy S. Woodall },
	       title        = {Open {MPI}: Goals, Concept, and Design of a Next
			       Generation {MPI} Implementation},
	         booktitle    = {Proceedings, 11th European PVM/MPI Users' Group
                  Meeting},
  year         = 2004,
  address      = {Budapest, Hungary},
  pages        = {97--104},
  month        = {September}
} 

@article{rolls_cloud2011,
  author    = {Philip M. Papadopoulos},
  title     = {Extending clusters to Amazon {EC2} using the Rocks toolkit},
  journal   = {{IJHPCA}},
  volume    = {25},
  number    = {3},
  pages     = {317--327},
  year      = {2011},
}


@inproceedings{easybuild2012,
  author    = {Kenneth Hoste and
               Jens Timmerman and
               Andy Georges and
               Stijn De Weirdt},
  title     = {{EasyBuild: Building Software with Ease}},
  booktitle = {2012 {SC} Companion: High Performance Computing, Networking Storage
               and Analysis, Salt Lake City, UT, USA, November 10-16, 2012},
  pages     = {572--582},
  year      = {2012},
}

@inproceedings{spack2015,
  author    = {Todd Gamblin and
               Matthew P. LeGendre and
               Michael R. Collette and
               Gregory L. Lee and
               Adam Moody and
               Bronis R. de Supinski and
               Scott Futral},
  title     = {The Spack package manager: bringing order to {HPC} software chaos},
  booktitle = {Proceedings of the International Conference for High Performance Computing,
               Networking, Storage and Analysis, {SC} 2015, Austin, TX, USA, November
               15-20, 2015},
  pages     = {40:1--40:12},
  year      = {2015},
}
